Publications: 2016

Other years

  • McCouch S, Wright M, Tung C-W, Maron L, McNally K, Fitzgerald M, Singh N, DeClerck G, Agosto Perez F, Korniliev P, Greenberg A, Nareda ME, Mercado SM, Harrington S, Shi Y, Branchini D, Kuser-Falçao, Leung H, Ebana K, Yano M, Eizenga G, McClung A, Mezey J. (2016) Open Access Resources for Genome Wide Association Mapping in Rice. Nature Comm, 7: 10532 doi 10.1038/ncomms10532
  • Crowell S, Korniliev P, Falcão A, Ismail A, Gregorio G, Mezey J, McCouch S (2016) Genome-wide association and high-resolution phenotyping link Oryza sativa panicle traits to numerous trait-specific QTL clusters. Nature Comm 7: 10527 doi 10.1038/ncomms10527
  • Spindel J, Begum H, Akdemir D, Collard B, Redoña E, Jannink J-L, McCouch S (2016). Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement. Heredity 116(4): 395-408, doi:10.1038/hdy.2015.113
  • Spindel J, McCouch S (2016) When more is better: how data sharing would accelerate genomic selection of crop plants. New Phytologist 212:4 814-826 doi: 10.1111/nph.14174.
  • Wang DR, Wolfrum EJ, Virk P, Ismail A, Greenberg A, McCouch SR (2016) Robust phenotyping strategies for evaluation of stem non-structural carbohydrate (NSC) dynamics in rice, Journal of Experimental Botany, Advance epub: Oct 5 2016 doi 10.1093/jxb/erw375.
  • Bessho-Uehara K, Wang DR, Furuta T, Minami A, Nagai K, Gamuyao R, Asano K, Angeles-Shim RB, Shimizu Y, Ayano M, Komeda N, Doi K, Miura K, Toda Y, Kinoshita T, Okuda S, Higashiyama T, Nomoto M, Tada Y, Shinohara H, Matsubayashi Y, Greenberg A, Wu J, Yasui H, Yoshimura A, Mori H, McCouch S, Ashikari M (2016) Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice. PNAS 113:32 8969-74 doi:10.1073/pnas.1604849113
  • Kim H, Jung J, Singh N, Greenberg A, Doyle J, Tyagi W, Chung J-W, Kimball J, Hamilton R, McCouch S (2016) Population dynamics among six major groups of the Oryza rufipogon species complex, wild relative of cultivated Asian rice. Rice 9:56 doi:10.1186/s12284-016-0119-0.
  • Maron L, Piñeros M, Kochian L, McCouch S (2016) Redefining ‘stress resistance genes’, and why it matters. Journal of Experimental Botany 67:19 5588-5591 doi:10.1093/jxb/erw323.
  • Biscarini F, Cozzi P, Casella L, Riccardi P, Vattari A, Orasen G, Perrini R, Tacconi G, Tondelli A, Biselli C, Cattivelli L, Spindel J, McCouch S, Abbruscato P, Valé G, Piffanelli P, Greco R (2016) Genome-Wide association study for traits related to plant and grain morphology, and root architecture in temperate rice accession. PLOS One 11:5 e0155425 doi: 10.1371/journal.pone.0155425
  • Kang H, Wang Y, Peng S, Zhang Y, Xiao Y, Wang D, Qu S, Li Z, Yan S, Wang Z, Liu W, Ning Y, Korniliev P, Leung H, Mezey J, McCouch S, Wang GL (2016) Dissection of the genetic architecture of rice resistance to the blast fungus Magnaporthe oryzae. Molecular Plant Pathology 17(6): 959-72, doi: 10.1111/mpp.12340
  • Eizenga G, Edwards JD, Yeater KM, McCouch S, McClung AM (2016) Transgressive variation for yield components measured throughout the growth cycle of Jefferson (Oryza sativa) x O. rufipogon introgression lines, Crop Science56:2336-2347, doi: 10.2135/cropsci2015.10.0603
  • Wang D, Bunce J, Tomecek M, Gealy D, McClung A, McCouch S, Ziska (2016) Evidence for divergence of response in Indica, Japonica, and wild rice to high CO2 x temperature interaction. Global Change Biology. 22 (7): 2620-32 doi:10.1111/gcb.13279
  • Ogawa S, Valencia M, Lorieux M, Arbelaez J, McCouch S, Ishitani M, Selvaraj M (2016) Identification of QTLs associated with agronomic performance under nitrogen-deficient condition using chromosome segment substitution lines of a wild rice relative; Oryza rufipogon. Acta Physiologiae. 38:4 doi: 10.1007/s11738-016-2119-5
  • Piñeros M, Larson BG, Shaff JE, Schneider DJ, Falcão AX, Yuan L, Clark RT, Craft EJ, Davis TW, Pradier P-L, Assaranurak I, McCouch SR, Sturrock C, Bennett M, Kochian LV (2016) Evolving technologies for growing, imaging, and analyzing 3D root system architecture of crop plants. Journal of Integrative Plant Biology, 58(3): 230-41, doi: 10.2222/jipb.12456
  • Bimber BN, Raboin MJ, Letaw J, Nevonen KA, Spindel JE, McCouch SR, Cervera-Juanes R, Spindel E, Carbone L, Ferguson B, Vinson A (2016) Whole-genome characterization in pedigreed non-human primates using genotyping-by-sequencing (GBS) and imputation. BMC Genomics 17: 676 doi 10.1186/s12864-016-2966-x.